PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MELO3C021555P1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family MYB
Protein Properties Length: 211aa    MW: 24448.3 Da    PI: 5.152
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MELO3C021555P1genomeMELONOMICSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding51.62.1e-161764148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g+WT eEd+ l ++++ +G g W++ a+  g++Rt+k+c++rw++yl
   MELO3C021555P1 17 KGPWTMEEDLMLMNYIANHGEGVWNSLAKAAGLKRTGKSCRLRWLNYL 64
                     79********************************************97 PP

2Myb_DNA-binding55.41.4e-1770113146
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      rg+ T+eE++l+ +++ ++G++ W++Iar+++ gRt++++k++w++
   MELO3C021555P1  70 RGNITPEEQLLIMELHSKWGNR-WSKIARHLP-GRTDNEIKNYWRT 113
                      7999******************.*********.***********96 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.604.7E-231067IPR009057Homeodomain-like
PROSITE profilePS5129415.5771264IPR017930Myb domain
SuperFamilySSF466892.21E-3015111IPR009057Homeodomain-like
SMARTSM007171.5E-111666IPR001005SANT/Myb domain
PfamPF002491.7E-151764IPR001005SANT/Myb domain
CDDcd001679.42E-91964No hitNo description
PROSITE profilePS5129425.53565119IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.6E-2468119IPR009057Homeodomain-like
SMARTSM007173.8E-1569117IPR001005SANT/Myb domain
PfamPF002496.5E-1670113IPR001005SANT/Myb domain
CDDcd001671.49E-1174113No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009740Biological Processgibberellic acid mediated signaling pathway
GO:0009867Biological Processjasmonic acid mediated signaling pathway
GO:0080086Biological Processstamen filament development
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 211 aa     Download sequence    Send to blast
MGTERLSSSQ DDDEVRKGPW TMEEDLMLMN YIANHGEGVW NSLAKAAGLK RTGKSCRLRW  60
LNYLRPDVRR GNITPEEQLL IMELHSKWGN RWSKIARHLP GRTDNEIKNY WRTRIQKHIK  120
QQEEVERVRD QMISIGNCSE TNDDCAISPC SQVSSFCNVA EPMEISHDYF PSSQGDMEAM  180
AYQHTTWDRG DGANDNYWSM EDLWSMQLLD *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C3e-251211922128MYB TRANSFORMING PROTEIN
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818900.0LN681890.1 Cucumis melo genomic scaffold, anchoredscaffold00048.
GenBankLN7132630.0LN713263.1 Cucumis melo genomic chromosome, chr_9.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008458780.11e-158PREDICTED: myb-related protein 340-like
SwissprotP813913e-82MYB05_ANTMA; Myb-related protein 305
TrEMBLA0A151QWW31e-89A0A151QWW3_CAJCA; Myb-related protein 305 family
STRINGGLYMA16G07960.11e-87(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF33053469
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G27810.12e-81myb domain protein 21